College of Liberal Arts & Sciences

Student Seminars 2015 - 2016

May 5, 2016 Jimmy Budiardjo (Karanicolas Lab)
April 28, 2016 GW McElfresh (Lab Rotation)
Chris Kropiewnicki (Lab Rotation)
Sang-jun Park (Lab Rotation)
April 21, 2016 Meghan Franklin (Lab Rotation)
Nathan Jenkins (Lab Rotation) - Block Model of Protein Assembly
Joonseong Lee (Lab Rotation)
April 14, 2016 Shipra Malhotra (Karanicolas Lab) - Allosteric Modulation of Protein-Protein Interactions
April 7, 2016 Jumin Lee (Im Lab)
Saveliy Belkin (Vakser Lab)
March 31, 2016 Seonghoon Kim (Im Lab) - Bilayer Properties of Lipid A from Various Gram-negative Bacteria
Yusuf Adeshina (Karanicolas Lab) - Experimental validation of Protein-RNA interaction models
March 24, 2016 Pushpa itagi (Im Lab) - Molecular Dynamics simulations of Lipopolysaccharide micelles
Huijing Wang (Ray Lab) - Transcriptional Burstiness and Its Effects on Phenotypic Switches in Bacterial Cells
March 10, 2016 Varsha Badal (Vakser Lab) - Cues for protein-protein interaction (PPI) sites using natural language processing (NLP)
March 3, 2016 Karen Khar (Karanicolas Lab) - Rescue of Cancer-Associated Mutations of p53
February 25, 2016 Ivan Anishchenko (Vakser Lab) - Consistent inference of residue-residue and atom-atom contact energies in proteins
February 18, 2016 Jiaqin Li (Egan Lab) - High Resolution Structure of the Regulatory Domain of the AraC Family Transcriptional Activator RhaR
February 11, 2016 GW McElfresh (Lab Rotation) - Comparison of Partial and Full Structure Alignments in Docking
Chris Kropiewnicki (Lab Rotation) - Comparing Information Flow in Single Cells and in Populations of Cells
February 4, 2016 Meghan Franklin (Lab Rotation) - How to Fold a Polymeric Beta Barrel
Nathan Jenkins (Lab Rotation) - Homologous Drug Design
December 3, 2015 Shipra Malhotra (Karanicolas Lab) - Allosteric Inhibition of Src-Kinase
November 19, 2015 Joonseong Lee (Lab Rotation) - Modeling and simulation of outer membrane proteins in outer membranes
Sang-jun Park (Lab Rotation) - 3D structure Prediction of N-glycan by Template-based Modeling
November 12, 2015 GW McElfresh (Lab Rotation) - Investigation of Specificity on Deubiquitinating Enzymes (DUBs)​
Chris Kropiewnicki (Lab Rotation) - Assessing and Improving DARC 2.0
November 5, 2015 Meghan Franklin (Lab Rotation) - Stochastic Modeling of the Assembly of the Proteasome
Nathan Jenkins (Lab Rotation) - Feasibility of Structural Cell Model
October 29, 2015 Seonghoon Kim (Im Lab) - CHARMM-GUI Ligand Reader and Modeler for CHARMM Force Field Generation of Small molecules
October 22, 2015 Varsha Badal (Vakser Lab) - Text Mining for Protein Docking
Huijing Wang (Ray Lab) - Using metabolite flickering to predict cell growth transitions
October 15, 2015 Pushpa Itagi (Im Lab) - Molecular Dynamics simulations of Lipopolysaccharide micelles
Ryan Suderman (Deeds Lab) - Limits of Information Transmission in Biochemical Signaling Networks
October 8, 2015 Ivan Anishchanka (Vakser Lab) - Clashes in template-based protein docking predictions
October 1, 2015 Jimmy Budiardjo (Karanicolas Lab) - Industry Internship: The Effect of Diffusion Layer pH on Solubility and Dissolution Rate of a Poorly Water Soluble Drug
September 24, 2015 Jumin Lee (Im Lab) - Molecular dynamics studies for the sugar transportation mechanism in phosphotransferase systems
September 17, 2015 Saveliy Belkin (Vakser Lab) - Finding inhibition site on protein-protein interface
September 10, 2015 Yusuf Adeshina (Karanicolas Lab) - Protein-RNA interaction: Breaking new "chemical" ground
September 3, 2015 Karen Khar (Karanicolas Lab) - Small molecule rescue of P53

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